PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0396671
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GATA
Protein Properties Length: 228aa    MW: 25018.2 Da    PI: 8.2957
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0396671genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.4e-17150183134
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                             C +Cgt +Tp+WR gp g+ktLCnaCG++y++ +
  RcHm_v2.0_Chr4g0396671 150 CLHCGTDQTPQWRAGPFGPKTLCNACGVRYKSGR 183
                             99*****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MVPLDPASCL VDDLRNFLSD VGDHDGRPDD PSRPLIATEE AEEELEWISN KDAFPAVETF  60
ILSEQVGGIA IAKHQSPVSV LENSTNSSSA SLMSSCGGLK PPHRARTKGR RRRSEIPAQQ  120
LFWNQPIESK PSRSHSASAS ASKLDIGRKC LHCGTDQTPQ WRAGPFGPKT LCNACGVRYK  180
SGRLCPEYRP ASSPTFSSEM HSNSHRKVLE MRKQKYGMGM VVKPEDTG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.15e-39GATA family protein