PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0399211
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 244aa    MW: 27541.4 Da    PI: 5.2831
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0399211genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.23e-135496754
                            HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                              Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  RcHm_v2.0_Chr4g0399211 54 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIREL 96
                            57*********************66......****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MDNIGDEYKH YWETNMFLQT EELDSWGLDE AFSGYYDSSS PDGAASSMAS KNIVSERNRR  60
KKLNERLFAL RAVVPNISKM DKASIIKDAI DYIRELHDQE KRIQAEIMDL ESGKSKKGVI  120
GSSDFEQELP VLLRSKKKKT EQLYDSGGSR TSSIEVLELR VTYMGEKTVV VSLTCSKRTD  180
TMVKLCEVFE SLKLKIITAN ITALSGRVLK TVFIEADEEE KDHLKVKIET AIAALNDPQS  240
PMSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-101bHLH family protein