PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0399591
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 172aa    MW: 19829.4 Da    PI: 7.5814
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0399591genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.98.5e-32141511128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevd...iykvePwdLpkkvkaeekewyfFskrdkkyatgk.rknratk.... 79 
                             lp+GfrF Ptdeelv++yL +k+ ++ ++++++i+e+d    y+ +P++L  +++ +e+ew+fF+++d ++ +++ +++r+++    
  RcHm_v2.0_Chr4g0399591  14 LPVGFRFMPTDEELVTHYLMNKACSRAVPVADAIQEIDatrFYSNHPKNLV-TFSDGEREWFFFIHEDDESCSSHaQRKRTVRevgn 99 
                             79*************************999998988874447889*****6.7788999*****99988776433133344333444 PP

                     NAM  80 .sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                               g+Wk  g+++++++++g++  +k  L++++g  +++k+++t+W m ey+l
  RcHm_v2.0_Chr4g0399591 100 gLGFWKPNGSENPICNEDGNVFATKIYLTYFSGscHSNKPKRTHWKMVEYHL 151
                             5789***************************8755889999**********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MGSQKGVVVS SDLLPVGFRF MPTDEELVTH YLMNKACSRA VPVADAIQEI DATRFYSNHP  60
KNLVTFSDGE REWFFFIHED DESCSSHAQR KRTVREVGNG LGFWKPNGSE NPICNEDGNV  120
FATKIYLTYF SGSCHSNKPK RTHWKMVEYH LQIRREWVVL GRLQRGMDYT GF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.12e-18NAC family protein