PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0400541
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 157aa    MW: 18087.2 Da    PI: 9.4641
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0400541genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.22.1e-25111421127
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknra 77 
                             lppG+rF P++e+l+++yL +k  + +    +   + ike+d+y+++P dLp        + +++++wy ++ r  k       +r 
  RcHm_v2.0_Chr4g0400541  11 LPPGCRFYPSEEQLLCYYLSHKNGAGQassgNGGYDLIKELDLYDHDPFDLPdYacysyGHGGRRRHWYCYTVRVVK-------ERR 90 
                             79********************998884444334458***************5356543222355588888877654.......344 PP

                     NAM  78 tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapk.gektdWvmheyr 127
                             +ksgyW+ +g+ ++v+ + ++++ g + +  fy g++pk +++tdWv+ +y+
  RcHm_v2.0_Chr4g0400541  91 AKSGYWRRKGRVRDVVGRgGNAVLGRRSSYEFYLGSSPKtAVRTDWVLYQYA 142
                             689**************9566679*********997766167*********6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    
MGDAKATSYY LPPGCRFYPS EEQLLCYYLS HKNGAGQASS GNGGYDLIKE LDLYDHDPFD  60
LPDYACYSYG HGGRRRHWYC YTVRVVKERR AKSGYWRRKG RVRDVVGRGG NAVLGRRSSY  120
EFYLGSSPKT AVRTDWVLYQ YARVDHVQVE LFRNQAG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.18e-17NAC family protein