PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0401791
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 306aa    MW: 33250.8 Da    PI: 8.7919
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0401791genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-203686256
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                            ++ GVr+++ +grWvAeI+d s   +r r +lg+++t+eeAa+a+++a+++l+ge
  RcHm_v2.0_Chr4g0401791 36 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 86
                            589******.7*********43...36**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MAGPELTKTT IATATTTATK AMSKSSTSSA KAALRRFVGV RQRPSGRWVA EIKDSSQRVR  60
LWLGTYDTPE EAARAYDEAA RALRGENART NFATPVANPD NNLSLLANSC PNPNGTFMPS  120
GLSDGRRSGG QGLSFSSLKA KLSKNLQSIM ARSSDHHNKS SKSRVSDHFT FASIFHFRKY  180
QQYQNNPVNP LFDMKNMEKV VQPSIIVPHA GETSTSTSTD PSSWESSSIS DCSDWGYSFR  240
QPGMDSDGSD LGDGFMDQIM GWMDSPDQMS SGTVGDDCEE GSRSKRFKVS SSVMVPSTFA  300
GSPYNN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-16ERF family protein