PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0401801

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

AP2

Protein Properties

Length: 553aa MW: 59845.3 Da PI: 7.4602

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0401801	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46	1.3e-14	190	249	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g RcHm_v2.0_Chr4g0401801 190 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 249 57*****************666664477446******99***********98 PP
2	AP2	47.1	5.9e-15	292	343	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g RcHm_v2.0_Chr4g0401801 292 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 343 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence
MDSNSPPHHH HPQNWLGFSL SNHFSSPPHN SHLSLFEAFT SSPDAGVNSA ASDHHQDAHA 60 GATETDLSIF SGVGPKLEDF LGGGCTTNTT AGVATATADV ITTASVTPTS LTAFSSTNDH 120 LAVSENEIYD SELKTIAASF LRGFSTAPTA TATATTTLQH TKPQIHNHPV GTTETATIKK 180 TVDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQVYLGGY DKEDKAARAY 240 DLAALKYWGP TTTTNFPVTN YEKELAGMKN MSRQEFVASL RRKSSGFSRG ASIYRGVTRH 300 HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKSI 360 ANSNLPIGGM SGKSKNSSDQ SLSADSKSLD DRDLSSASSV TFASSSHQPS NSSTLSFAIP 420 IKQDPSSEYW SNIFGYHVPN NNPSLNNVRN PNSVGIAPTY FHSNMDFSAT SSTATATSET 480 NNGLFYSGGY NVHGQQQQQQ QQQSTSSGTN NSIPFSTPLG LSSNMGYDQG SSGYGTWIGP 540 SLNLFQTPIF GME

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence

MDSNSPPHHH HPQNWLGFSL SNHFSSPPHN SHLSLFEAFT SSPDAGVNSA ASDHHQDAHA  60
GATETDLSIF SGVGPKLEDF LGGGCTTNTT AGVATATADV ITTASVTPTS LTAFSSTNDH  120
LAVSENEIYD SELKTIAASF LRGFSTAPTA TATATTTLQH TKPQIHNHPV GTTETATIKK  180
TVDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQVYLGGY DKEDKAARAY  240
DLAALKYWGP TTTTNFPVTN YEKELAGMKN MSRQEFVASL RRKSSGFSRG ASIYRGVTRH  300
HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKSI  360
ANSNLPIGGM SGKSKNSSDQ SLSADSKSLD DRDLSSASSV TFASSSHQPS NSSTLSFAIP  420
IKQDPSSEYW SNIFGYHVPN NNPSLNNVRN PNSVGIAPTY FHSNMDFSAT SSTATATSET  480
NNGLFYSGGY NVHGQQQQQQ QQQSTSSGTN NSIPFSTPLG LSSNMGYDQG SSGYGTWIGP  540
SLNLFQTPIF GME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	1e-139	AP2 family protein