PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0402731

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 155aa MW: 17028.8 Da PI: 8.5295

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0402731	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.6e-05	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H RcHm_v2.0_Chr4g0402731 58 FSCNYCQRKFYSWQALGGHQNAH 80 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence
MDFQTPNTSL HLSQPNNHHH QLNLDLVLDH LSSSSSSSSS SSTLSVPPVA DQTTRRVFSC 60 NYCQRKFYSW QALGGHQNAH KLERTLAKKS RDQLSSTVGP HHGGSLNQRP GSSAPPRLAG 120 LAHAGRFGDH IMNCGYRPAE NVEEEIGHLD LSLRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	2e-20	C2H2 family protein