PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0403251
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 154aa    MW: 17072.5 Da    PI: 8.0666
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0403251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41.1e-0739791155
                            HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                             RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  RcHm_v2.0_Chr4g0403251 39 ARREKISQRMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 79
                            5******************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    
MRYKSSGELV SANGCKDSSG KRMELEGSRN ENGNSKAEAR REKISQRMKI LQDLVPGCNK  60
VIGKALVLDE IINYIQSLQH QVEFLSLNIE AVNSRVNMNP AIEAFPSKDV FFPGAQQFDA  120
AALLFGPHTP REYVQGSQAK WLHMQVGGCL DFVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-48bHLH family protein