PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0403391
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 150aa    MW: 16819.7 Da    PI: 9.067
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0403391genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.51.7e-113186357
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+++t+ ql++L+ l++ +     ++++e+  +l    ++++++V++WFqN +a+e++
  RcHm_v2.0_Chr4g0403391 31 NRWAPTPPQLRILKGLYYDKG---FKQIQEICLHLkqygQIEDKNVFFWFQNLKARERQ 86
                            7*****************986...588888888888889******************97 PP
2Wus_type_Homeobox78.31.1e-252986263
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63
                            +++RW+Ptp Q++iL+ ly+ +G      ++iq+i  +L++yG+iedkNVf+WFQN kaRerq
  RcHm_v2.0_Chr4g0403391 29 TNNRWAPTPPQLRILKGLYYdKGF-----KQIQEICLHLKQYGQIEDKNVFFWFQNLKARERQ 86
                            679***************985776.....69*******************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    
MEQQTQQQIE DGGNNQAAGS SANTPIRPTN NRWAPTPPQL RILKGLYYDK GFKQIQEICL  60
HLKQYGQIED KNVFFWFQNL KARERQLMRP IRKVRVGGSL DLNFGSTSST DDGRSIDLNF  120
GSTGSTSTDR SIDLNFGSRV GYGVDGSIME
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.15e-19WOX family protein