PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0405511
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 205aa    MW: 23334.7 Da    PI: 5.3873
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0405511genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.000131011371555
                             HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +i +++  L++l+P +    +k   Ka ++ + ++YI+sLq
  RcHm_v2.0_Chr4g0405511 101 KISQRMKILQDLVPGC----NKVIGKALVVDEIINYIQSLQ 137
                             899************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MVFVIQGNAS SGMGVAEDCC NTFLELQRKK AFRYVIFKID EKKKEVVVEK TRGPAESYDD  60
FTGSLPENDC RYAIYDFDFV TSENCQKSKI FFIARFVSFE KISQRMKILQ DLVPGCNKVI  120
GKALVVDEII NYIQSLQRQV EFLSLNLEAV NSRVNMNPAI EVFPSKDQFD AAALLFGPHT  180
PREYVQGSQA EWLHMQVGGS FERTT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.15e-50bHLH family protein