PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0405961
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 166aa    MW: 18378 Da    PI: 8.9316
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0405961genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.60.0001258951254
                            HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                            R ++  +++  L++l+ +      +K + a++L +A++YI+ L
  RcHm_v2.0_Chr4g0405961 58 RKEKFGERIVALQQLVSPY-----GKTDTASVLLEAMDYIRFL 95
                            6666667888999999988.....9****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    
MIASSLCNAT SRFSGEEGID VRKMTEHKRS PCSVDQSSVT ALASKRHKTD LSMSTKERKE  60
KFGERIVALQ QLVSPYGKTD TASVLLEAMD YIRFLHEQVK VLSAPYLQST PTAKMQELHP  120
YSLRSRGLCL VPVDCTVGVA QSNGADIWAP IKTTSPKFEN VTSNFH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.32e-67bHLH family protein