PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0406441

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

DBB

Protein Properties

Length: 239aa MW: 26223.5 Da PI: 4.4987

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0406441	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.4	2.5e-07	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ +++ C ++ lC++C +e H H++ RcHm_v2.0_Chr4g0406441 4 QCDVCEKAPATVICCADEAALCAKCDVEVHAAnklaskHQR 44 7*****************************65667777765 PP
2	zf-B_box	30.8	5.8e-10	53	94	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + ++C+ +++k + +fC +++ l+C+dC +++H+ H RcHm_v2.0_Chr4g0406441 53 KLPRCDICQDKAAFIFCVEDRALFCQDCDESIHSAnslsanH 94 789******************************655666666 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MKIQCDVCEK APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLESL SNKLPRCDIC 60 QDKAAFIFCV EDRALFCQDC DESIHSANSL SANHQRFLAT GIRVALSSPC TKDAETSSVE 120 PPNHSPQLVS TKVPTPHASL ISSPWGVDDL LQLSDFESSD KKESLEFGEL EWIADMGLFG 180 EQFPQEALAA AEVPQLPVSQ SSNYTSYRPP KSNSPFKKPR IEIPDDDDEH FTVPDLGIF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06040.1	1e-104	DBB family protein