PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0406491
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 177aa    MW: 20707.9 Da    PI: 10.037
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0406491genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.39.5e-2712100290
                    FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                             fY++YA+++GF +r+ + ++s+r+g+i  r++ C+keg+  + + k    r++ra+tr gCka+++vk +k+gkw++tk+++eHnH+
  RcHm_v2.0_Chr4g0406491  12 FYDDYARRLGFVMRVMSCRRSERDGRILARRLGCNKEGHCVSIRGKFGPVRKPRASTREGCKAMIHVKYDKSGKWVITKFVKEHNHS 98 
                             9**************************************99999998***************************************9 PP

                    FAR1  89 la 90 
                             l+
  RcHm_v2.0_Chr4g0406491  99 LV 100
                             96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MEFESEDAAK IFYDDYARRL GFVMRVMSCR RSERDGRILA RRLGCNKEGH CVSIRGKFGP  60
VRKPRASTRE GCKAMIHVKY DKSGKWVITK FVKEHNHSLV VSPREARQTM DEKDKKIQEL  120
SAELRNKKRL CTTYQEQLTA FMKIVEEYND QLSLKVKNVV NNLKEFESID VELTQRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.11e-107FAR1 family protein