PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0406521

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 233aa MW: 26449.9 Da PI: 8.7619

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0406521	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.8	1.8e-28	69	156	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+e+eH+H+ RcHm_v2.0_Chr4g0406521 69 FYNAYATHVGFIIRVSKLSRSRRDGTAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFEKEHTHP 153 ****************************************9988..9************************************ PP FAR1 89 lap 91 l+p RcHm_v2.0_Chr4g0406521 154 LTP 156 986 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MEGSRAGDEN ETGASSVEGA FQLGQEEKII LDSSGRNIIP SAIPVVSVVS ADEPYVGQEF 60 ETEAAAHAFY NAYATHVGFI IRVSKLSRSR RDGTAIGRAL VCNKEGYRMP DKREKIVRQR 120 AETRVGCRAM ILVRKVSSGK WVVTKFEKEH THPLTPGKGR RDCIYDQYPN EHDKIRELSQ 180 QLAVEKKRAA TYKRHLDLIF EHIEEHNESL SKKIQHIVDS VKEIESKEQQ VYR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	3e-94	FAR1 family protein