PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0406661
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 352aa    MW: 39579.1 Da    PI: 6.5198
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0406661genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.26.6e-16132180153
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                             s ++GVr++k  g+W+AeIrdp     +  r +lg++ taeeA +a++ +r k+
  RcHm_v2.0_Chr4g0406661 132 SPFRGVRQRK-YGKWAAEIRDPI----KgGRLWLGTYATAEEASQAYETMRCKF 180
                             679******9.7*********83....358********************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MCFCILEKES TLDRISLKTM SRPSLNQRKH KSKQSSKRRE FHAHNEDNKV LTRKVRIMFN  60
DPDATDSSSS SEDETMETAQ YEKKKSLKKS KRFVQEVIHS FFMHSGRAVG CEAPPETRTT  120
RTSSGRKRFS SSPFRGVRQR KYGKWAAEIR DPIKGGRLWL GTYATAEEAS QAYETMRCKF  180
DEILRATTTS ISDKNNKDDK SNSDHEHLFL LRKATPITAS NSGGNALLSH KGPPVAVLDF  240
GKNADSDKEN IGTNNVGQLR IPLDLSFLDE ALQSLPSDQQ QQDVDFNFVP DNEELDKLAS  300
SIASSSLEEL GKYFDGMYCS IDDIKIGGVD DDNPTNLPDC NDFDDILIVQ SN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.14e-16ERF family protein