PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0407541

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 330aa MW: 36606.8 Da PI: 7.2693

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0407541	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	44.7	2.2e-14	262	286	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ + ++G C+yGd+C+FaHg RcHm_v2.0_Chr4g0407541 262 KTELCNKWEESGACPYGDNCQFAHG 286 9***********************9 PP
2	zf-CCCH	24.2	5.7e-08	299	324	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt +Cr + GtC+yG rC+F H+ RcHm_v2.0_Chr4g0407541 299 YKTQICRMVLTRGTCPYGHRCHFRHS 324 9**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MASNCFDGST CQLYYSSSQL REEATMQSKQ AMETNSSAAS PNSSALSDST NQPAAASYFA 60 SSMYSSIFPQ KFTLPSSLSL TPSTLSDDDG DHHDDDCNTM HRLGQAQLVL ECEELRNHLR 120 DLNNEVDSLR RENAVLRSAN TDLVKLLSSP AALHNFLNAS TYLNTFMADE LKPLGVGVFS 180 PRDGDEASDI SPTSVIMERN RFNADRFSLP KSISVRSSGY KKVNPSFGAN QLLQDGPARV 240 PKEGSSGAMQ VKVKAYNQGM LKTELCNKWE ESGACPYGDN CQFAHGVREL RPVMRHPRYK 300 TQICRMVLTR GTCPYGHRCH FRHSLNDQHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	2e-63	C3H family protein