PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0407551
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YC
Protein Properties Length: 124aa    MW: 13919.3 Da    PI: 9.1213
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0407551genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1062.3e-3310891896
                   NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdiv 96
                             h+lPlar+k+i+k++   kmis+e+P+l+skacelfi+eltlr+wl+ae +krrtl+k+dia+a+ + +  ++fl  iv
  RcHm_v2.0_Chr4g0407551 10 CHQLPLARVKRIMKSNGVAKMISSETPILFSKACELFIMELTLRAWLQAEVSKRRTLQKCDIAKAIRNDQlLHNFLAPIV 89
                            69****************************************************************98762567887665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    
MHVKTVSRSC HQLPLARVKR IMKSNGVAKM ISSETPILFS KACELFIMEL TLRAWLQAEV  60
SKRRTLQKCD IAKAIRNDQL LHNFLAPIVF CTLHDHEGEN KNEVEILGDP SSMSSAPGFP  120
SKVC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.11e-30NF-YC family protein