PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0413481

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HSF

Protein Properties

Length: 476aa MW: 53177.8 Da PI: 5.4984

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0413481	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.1	7.9e-35	16	106	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl k+y++++d++++e++sws+n++sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F + RcHm_v2.0_Chr4g0413481 16 FLLKTYDMVDDSATDEIVSWSSNKKSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFIQ 93 9**************************************************************999.........****** PP XXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkk 101 ++k+ll++i+r+k RcHm_v2.0_Chr4g0413481 94 DQKHLLKNIHRRK 106 *********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MDGTSAAGGG GGPAPFLLKT YDMVDDSATD EIVSWSSNKK SFVVWNPPEF ARLLLPTYFK 60 HNNFSSFIRQ LNTYGFRKID PERWEFANEE FIQDQKHLLK NIHRRKPIHS HSNPQGSMVD 120 QERAALDDEI EKLSNEKAAL EANISRFQQQ RSAEKLQLED LTQRVNGMEQ RQNNLLTFLD 180 KAVQNPAFVE HLARKIESMD FSAYNKKRRL PDADHSQLVV DNSFVDNQSS SRSEFGNFFH 240 QDFSNKLRLE LSPAVSDMNL VSRSTQSSNE DGDSSSRKIS EELKGAQMRT EGLLFANEPL 300 ELSDTGTSFA FKMDSLSRKA PNVGSPGLHS LQSGLPSNED SDGQITCHLN LTLSSSPLKV 360 ISSPHSATVP LVGQDICNSP SPGLNATNKE SDIRALPQKN LADEDRPKSS QKEATKHSKG 420 HISVPVRVND VFWEQFLTER PGCSENEEAS SNFRENPYDE QDGMARNAKG AETLTL

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MDGTSAAGGG GGPAPFLLKT YDMVDDSATD EIVSWSSNKK SFVVWNPPEF ARLLLPTYFK  60
HNNFSSFIRQ LNTYGFRKID PERWEFANEE FIQDQKHLLK NIHRRKPIHS HSNPQGSMVD  120
QERAALDDEI EKLSNEKAAL EANISRFQQQ RSAEKLQLED LTQRVNGMEQ RQNNLLTFLD  180
KAVQNPAFVE HLARKIESMD FSAYNKKRRL PDADHSQLVV DNSFVDNQSS SRSEFGNFFH  240
QDFSNKLRLE LSPAVSDMNL VSRSTQSSNE DGDSSSRKIS EELKGAQMRT EGLLFANEPL  300
ELSDTGTSFA FKMDSLSRKA PNVGSPGLHS LQSGLPSNED SDGQITCHLN LTLSSSPLKV  360
ISSPHSATVP LVGQDICNSP SPGLNATNKE SDIRALPQKN LADEDRPKSS QKEATKHSKG  420
HISVPVRVND VFWEQFLTER PGCSENEEAS SNFRENPYDE QDGMARNAKG AETLTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-161	HSF family protein