PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0415231
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 402aa    MW: 44502.8 Da    PI: 9.2329
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0415231genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97.2e-20212261356
                     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                             ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+ge
  RcHm_v2.0_Chr4g0415231 212 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAASAYDTAAYMLRGE 261
                             8******9.**********955...5*************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    
MDDKFPKMET FIPKQLPYFP GMASSTGSNF LGDPASWEVS GLKSSLSPES STSSSADEVS  60
GNSTLINKTN PVVPVNFLET FPVLNKAHVS DQPPTSPASL SSKPSNFPNL TLLSQEPTTL  120
LDPSSTKKCD ESMFSSLSPS FPLPHLEHCQ PGFDQWLKIS QTLANNPSKG FNDYWLSATK  180
TQPMKYSGRS RFQNQQQKQP SAPIPSSQEK LFRGVRQRHW GKWVAEIRLP RNRTRVWLGT  240
FDTAEEAASA YDTAAYMLRG EYAHLNFPDS KHQLKANALN GSTSTTAALL EAKLQLAISQ  300
QANKKTNIME SSSSTSPPSP KKKKHSSADD RHQKNSNSII NSNLISQNQI TRKEWQLGSD  360
QVIFESKKSQ DVISSSDMDA VQLSRMPSLD MDKIWDALLV SD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.19e-56ERF family protein