PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0415391
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family G2-like
Protein Properties Length: 307aa    MW: 33308.9 Da    PI: 6.7742
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0415391genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1092.5e-344296155
                 G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                            kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl
  RcHm_v2.0_Chr4g0415391 42 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 96
                            79****************************************************8 PP
2Myb_DNA-binding77.91.3e-244495148
                            TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48
                            r+rWT+e++e++vdav+qlGg+   t+ktI+rtmg kg+tl+++ks++qky+
  RcHm_v2.0_Chr4g0415391 44 RLRWTAELHERFVDAVTQLGGPdkaTPKTIMRTMGvKGLTLYHLKSHLQKYR 95
                            89*************************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MYSALHSLPL DGGVCGHGEF SGSLDGTNLP GDACLVLTTD PKPRLRWTAE LHERFVDAVT  60
QLGGPDKATP KTIMRTMGVK GLTLYHLKSH LQKYRLGKQS FKESTENSKD ASCIAESQDT  120
GSSATSSRVI AQDLNDGYQV TEALRVQMEV QRRLHEQLEV QRRLQLRIEA QGKYLQSILE  180
KACKALNDQA ATAAGLEAAK EELSELAIKV SSDCQGMAPL DTIKMQSLSE IAAAIENKSA  240
PNVLARIGNC SVDSCLTSTG SPGSPMGMSS LAAAMKKRQR PFFSNGDSFP LEGNMRQEVE  300
WMMTNIA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.11e-128G2-like family protein