PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0415831
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 121aa    MW: 14758.5 Da    PI: 10.785
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0415831genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-17552148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd ll ++++++G g+W++I+   g++R++k+c+ rw++yl
  RcHm_v2.0_Chr4g0415831  5 KGAWTKEEDHLLRKCIEKHGEGRWHKIPLQAGLKRCRKSCRMRWLNYL 52
                            79********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    
MELRKGAWTK EEDHLLRKCI EKHGEGRWHK IPLQAGLKRC RKSCRMRWLN YLKPTIKRGE  60
FEDDEVDLMI RLYKLLGNRQ GLHTTDRFLY NILIKFRANK VKKKKKKNLF CPFKHEKKNF  120
C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-38MYB family protein