PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0417851
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YC
Protein Properties Length: 259aa    MW: 28861.6 Da    PI: 6.3414
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0417851genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.41.4e-55791821101
                   NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 
                             ql++fw+ q   ie+a+dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+t
  RcHm_v2.0_Chr4g0417851  79 QLQNFWSGQyqeIEQANDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAIT 165
                             89****988888*************************************************************************** PP

                   NF-YC  85 rtdifdflvdivprdel 101
                             rtdifdflvdivpr++l
  RcHm_v2.0_Chr4g0417851 166 RTDIFDFLVDIVPREDL 182
                             **************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MDQQGHGHPT TMGVPGAGQA SYGVNPYQPS QMMGLSPTGS VGMMQSPTQP GGPSAPSQLA  60
QHQAYQHIHQ QQQQQLQQQL QNFWSGQYQE IEQANDFKNH SLPLARIKKI MKADEDVRMI  120
SAEAPVIFAR ACEMFILELT LRSWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRE  180
DLKDEVLASI PRGGNVPVVG PADGLPYYYM PAQHPPQVGA PGMMVGKPVM DQNMYGQPTH  240
PYMAQPAWPQ QQQPHKDSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.34e-80NF-YC family protein