PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0421551
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 403aa    MW: 45001.2 Da    PI: 4.9332
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0421551genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19e-183280355
                     AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            + GVr+++ +gr++AeIrdps+   + r++lg+f+ta+eAa a+++a+++++g
  RcHm_v2.0_Chr4g0421551 32 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAQEAALAYDRAALSMKG 80
                            56******.**********965...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    
MPISTSKAME KPLSQSGERS RGRRKQAEPG RFLGVRRRPW GRYAAEIRDP STKERHWLGT  60
FDTAQEAALA YDRAALSMKG AQARTNFIYS DNSTFHSLLT PFDVQTLLPQ QSLEFFTSTT  120
TQTPRQQQPT NQNSPPGQSS MFYQNERNPN IRSNNEKPSF DSLFFSNDFS SDNSGYLGCI  180
VPDNCLRPPC DIPRSSDLTT TTHTLNIDHQ NFSFPNTANS SIQTQPHCDQ SSTATTFPLD  240
VMNVPASIMA SSSNPGDQLS CFEGFSHGFW GDNQQYSSWD QLNYRELSTM MDNNPLMTED  300
GCNIGALYPI IENPSSSSFS CSPSVHPPIG DVCNYPKKNL PFGEEIWDML IMVQQALMET  360
VGIDIKSAFS SLTVLCIPFE NGACLASLVV SLWLYWPSHI LIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.17e-43ERF family protein