PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0421561

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 475aa MW: 50005.7 Da PI: 7.8861

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0421561	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.3	9.1e-12	49	73	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG+C yG+rC+++H++ RcHm_v2.0_Chr4g0421561 49 EADCSYYLRTGICGYGSRCRYNHPR 73 789********************96 PP
2	zf-CCCH	39.1	1.3e-12	95	119	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++Ck++H++ RcHm_v2.0_Chr4g0421561 95 QPVCQYYMRTGTCKFGATCKYHHPK 119 689********************96 PP
3	zf-CCCH	36.7	7.2e-12	139	165	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +tG+Ck+G++CkF+H++ RcHm_v2.0_Chr4g0421561 139 PGERECSYYVKTGQCKFGATCKFHHPQ 165 5789*********************97 PP
4	zf-CCCH	35.9	1.3e-11	300	325	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++rtG Ck+G++C+++H+ RcHm_v2.0_Chr4g0421561 300 PGQAECQYYLRTGDCKFGSSCRYHHP 325 5789*********************8 PP
5	zf-CCCH	35.6	1.6e-11	348	372	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC ++a+ G Ck+G+ CkF H++ RcHm_v2.0_Chr4g0421561 348 APLCTHYAQRGACKFGAACKFDHPM 372 68*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MERYGRNTEG TQSDPSPEWS GPGPETGLEE SMWQLGLGPG ESYPERPEEA DCSYYLRTGI 60 CGYGSRCRYN HPRDRTAVTG ALRAGGVEYP ERVGQPVCQY YMRTGTCKFG ATCKYHHPKQ 120 GGGSAAPVSL NYYGYPLRPG ERECSYYVKT GQCKFGATCK FHHPQLTGTQ SQVPSQAQAS 180 IIPAPTLYQT VQTPSVSSQP YGTVMVARPP LLPSSYVQSP YGPMLIPPGM VPFSGWSPYP 240 AGASPLASPS TQTAVGSGAL YGINQLSPSA PAYTGIFPTV PFSLGPPTSS QKEQSHPERP 300 GQAECQYYLR TGDCKFGSSC RYHHPAEVVA PNTPVVLSSI GLPSRPGAPL CTHYAQRGAC 360 KFGAACKFDH PMGTLSYSPS ASSLTDMPVA PYPVGSSIGT LAPSSSSSEL RPELNSGTSK 420 DSVSARMSSS LSTVSGSVGS TVSKDGVAHL GGQLSAQGSG PSPTSDNSTE CHSSS

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MERYGRNTEG TQSDPSPEWS GPGPETGLEE SMWQLGLGPG ESYPERPEEA DCSYYLRTGI  60
CGYGSRCRYN HPRDRTAVTG ALRAGGVEYP ERVGQPVCQY YMRTGTCKFG ATCKYHHPKQ  120
GGGSAAPVSL NYYGYPLRPG ERECSYYVKT GQCKFGATCK FHHPQLTGTQ SQVPSQAQAS  180
IIPAPTLYQT VQTPSVSSQP YGTVMVARPP LLPSSYVQSP YGPMLIPPGM VPFSGWSPYP  240
AGASPLASPS TQTAVGSGAL YGINQLSPSA PAYTGIFPTV PFSLGPPTSS QKEQSHPERP  300
GQAECQYYLR TGDCKFGSSC RYHHPAEVVA PNTPVVLSSI GLPSRPGAPL CTHYAQRGAC  360
KFGAACKFDH PMGTLSYSPS ASSLTDMPVA PYPVGSSIGT LAPSSSSSEL RPELNSGTSK  420
DSVSARMSSS LSTVSGSVGS TVSKDGVAHL GGQLSAQGSG PSPTSDNSTE CHSSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-160	C3H family protein