PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0421711
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YB
Protein Properties Length: 164aa    MW: 18609.9 Da    PI: 6.1472
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0421711genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB163.33.5e-5124117396
                   NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 
                             + d++lPianv+rimk++lP nakisk+aket+qecvsefisfvt+eas+kcq+ekrkt+ngdd++walatlGf++y+ pl+ yl++
  RcHm_v2.0_Chr4g0421711  24 QPDQLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASHKCQKEKRKTVNGDDICWALATLGFDNYAGPLRRYLHR 110
                             5699*********************************************************************************** PP

                   NF-YB  90 yrelege 96 
                             yr+ eg+
  RcHm_v2.0_Chr4g0421711 111 YRDQEGA 117
                             ***9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MVDNIGGSAP NICDHGQGDI KTEQPDQLLP IANVGRIMKQ ILPPNAKISK EAKETMQECV  60
SEFISFVTGE ASHKCQKEKR KTVNGDDICW ALATLGFDNY AGPLRRYLHR YRDQEGAEHI  120
ANDNNNNEDK LKLLVNNILS TDQEQRIIMI MNQYDHPHHD IQKT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.17e-54NF-YB family protein