PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0423581
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 255aa    MW: 28391 Da    PI: 6.719
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0423581genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-2079127355
                     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             y+G+r+++ +g+W+AeIrdp     +  r++lg+f t+eeAa+a+++a+++++g
  RcHm_v2.0_Chr4g0423581  79 YRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTFNTPEEAARAYDEAARRIRG 127
                             9*******.**********72....35************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MCGGAIISDF TEAKRGWKLT AEGLWSELDT ISDLLGLDSS SNNRQVPHHN LAQKAKVDPN  60
PVTKVAEDGK TKRVRKNIYR GIRQRPWGKW AAEIRDPHKG VRVWLGTFNT PEEAARAYDE  120
AARRIRGDKA KLNFPPQPAP VPAPAPASAQ LQPPSKKRCM ALESTAPAMM GMEPYYPSFQ  180
NEFYCKSETA AGHHECELKE QISSLESFLG LDESVSSNEV MSGLGIGEPD SVDLWMLDDL  240
VTHHQQQGRE HQLVY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.17e-44ERF family protein