PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0424251
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GATA
Protein Properties Length: 153aa    MW: 16336.5 Da    PI: 10.1482
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0424251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.31e-183771135
                    GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                            C  Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  RcHm_v2.0_Chr4g0424251 37 CFDCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 71
                            99******************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    
MLDPCDKLSD QGSESEDMNV IKHPNEGSSE EGQKRTCFDC GTSKTPLWRG GPAGPKSLCN  60
ACGIRSRKKR RAILGINKSG AGGGGSGSAD ENRKGKKSSS NKQLGDGLKQ RLLALGREVL  120
MQRSTVERQR RKLGEEEQAA VLLMALSYGS VSA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16796RKKRRAILGINKSGAGGGGSGSADENRKGK
26897RKKRRAILGINKSGAGGGGSGSADENRKGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-50GATA family protein