PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0424371
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 173aa    MW: 19352.6 Da    PI: 6.7988
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0424371genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox512.5e-16767256
                            T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
                Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                            ++R+ +t +q+++L+el+     + p+ e+ ++++ +l    +++ ++V++WFqN+Ra+ek
  RcHm_v2.0_Chr4g0424371  7 STRWLPTIDQIRILKELYDDkgVKSPTVEQVQRITLQLkwyeQIENKNVFYWFQNQRAQEK 67
                            58*****************6579************************************98 PP
2Wus_type_Homeobox87.81.1e-28670265
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                            ++tRW Pt +Qi+iL+ely+ +G+++P+ e++qrit +L+ y +ie+kNVfyWFQN++a e+ k+
  RcHm_v2.0_Chr4g0424371  6 SSTRWLPTIDQIRILKELYDdKGVKSPTVEQVQRITLQLKWYEQIENKNVFYWFQNQRAQEKLKK 70
                            789****************999***************************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MHCRQSSTRW LPTIDQIRIL KELYDDKGVK SPTVEQVQRI TLQLKWYEQI ENKNVFYWFQ  60
NQRAQEKLKK KLTSDVQVPK QRSELVGGSI NLNFGSTSST GVGGSIMEQR GEDHQEIKTL  120
PLFPMHGEDI FGNMKITSEG GSGYDDYSGG GYNGGSRISL ELSLNSSGAT DSA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.19e-27WOX family protein