PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0425711
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 275aa    MW: 31359 Da    PI: 9.318
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0425711genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.6e-1824116199
                             EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                             ffk+      +++  l++p  f +++  +++  +  tl+l+++s  sW+vk+    +++ ++l++GW+eF ++n L + +f+vF++d
  RcHm_v2.0_Chr4g0425711  24 FFKII--RPGFNTEHLRIPPAFRKHIlhESI--KRATLKLKNSSDTSWTVKV--IITGRDIYLKDGWQEFLRDNSLGDSEFLVFRYD 104
                             66666..55666777*******877765444..6679***************..777777*************************** PP

                             SSSEE..EEEEE-S CS
                      B3  86 grsefelvvkvfrk 99 
                             +++ f   + +f+k
  RcHm_v2.0_Chr4g0425711 105 KNMHF--IINIFDK 116
                             99999..9999997 PP
2B3469.6e-151952741398
                             TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                      B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                             s+++ +p +f +e+ +++ +  +l l + +g +++v+l    + ++++l++GW++F ++n+L+e D+++F+l++  e ++vv++fr
  RcHm_v2.0_Chr4g0425711 195 SKMVAIPTHFYREIFSSS-KYDELFLVTAKG-KFTVTL--LPCTDTVMLSGGWSSFRNDNQLQEDDICIFELVK--ENTMVVHIFR 274
                             46689*********5443.334788888666.699999..*******************************986..6678****98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MARRACTSLP FHDGSVEEEK GPTFFKIIRP GFNTEHLRIP PAFRKHILHE SIKRATLKLK  60
NSSDTSWTVK VIITGRDIYL KDGWQEFLRD NSLGDSEFLV FRYDKNMHFI INIFDKNCVE  120
RVNITDLRTH KAPTFPDNPK GPLARPPTAA GDHRYDLAVE AAHVLKSKGE HLPSYAAAAA  180
FKSKFPYFAK VLAGSKMVAI PTHFYREIFS SSKYDELFLV TAKGKFTVTL LPCTDTVMLS  240
GGWSSFRNDN QLQEDDICIF ELVKENTMVV HIFRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.12e-16B3 family protein