PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0428551
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 271aa    MW: 29456.8 Da    PI: 5.0551
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0428551genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-194392255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            ++ GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  RcHm_v2.0_Chr4g0428551 43 RFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 92
                            678******.**********965...5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MEYFTNSSSK GGNSPSPTSS KSKKKPQQQQ NQQPQQQQQQ ETRFLGVRRR PWGRYAAEIR  60
DPSTKERHWL GTFDTAEEAA LAYDRAARSM RGSKARTNFV YSDMPHGSSV TSIISPDESH  120
RDMSAFFTAP PQPQTQMITT HNNGQQQQQQ PFFTQDPFDA YPFSGGSYGS YGPGSGCAVG  180
DGAGSHDNEL PPLPPSVSST GYGPGEVMGS DFDGFSEPTT THGFDSLASG SYMGFDSNEF  240
VQHSPLFGSM PPVSDSGIDG FDLGSSSAYF Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.19e-39ERF family protein