PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0428891
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 236aa    MW: 26482.7 Da    PI: 6.6372
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0428891genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-204897255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                            +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa a+++a++k++g
  RcHm_v2.0_Chr4g0428891 48 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEDAAIAYDNAALKFKG 97
                            7********.**********94....45************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MSAMVSALTQ VIGNPEEDNK VQSNPSVKDE PDRSQPVQDQ ESTVRKRHYR GVRQRPWGKW  60
AAEIRDPKKA ARVWLGTFET AEDAAIAYDN AALKFKGTKA KLNFPERVQG NSSFLMQGSS  120
GTTSSGSSVS TERNPGRPAA TVPHHDAPLV AASQQQQESS SFPDLYQYAQ LLQSNDIDFS  180
SNYQYTSNPF NHPQFSTPQF PPSTYYPSHQ QQGQQDDHGQ EDQHDNKNWN RRNPSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.12e-40ERF family protein