PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0429161
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 185aa    MW: 20481.6 Da    PI: 6.0201
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0429161genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.7e-103885455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                            +h+ +Er RR++i+ ++  L++l+P +    +k   Ka iL + ++Y++ Lq
  RcHm_v2.0_Chr4g0429161 38 SHSLAERARRAQIRMRMKLLQSLVPGC----DKITGKAHILDEIIKYVQLLQ 85
                            8*************************9....899***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MEHQLKELMG KRSRLSAEGV ATEDYVRVKA RRGEATDSHS LAERARRAQI RMRMKLLQSL  60
VPGCDKITGK AHILDEIIKY VQLLQNQVES LAAKLAFVDL MLYDCEPNPS GNACVPEGLL  120
PSVPESSSIP FMSFADGGVS HSASLLLKED QIATLIPQYG RDLLLDLEEQ PEAIRQLMHL  180
LSSAN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-34bHLH family protein