PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0429461

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 251aa MW: 28586.3 Da PI: 9.1775

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0429461	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.5	3.7e-51	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeelv +yLk+kv + +l++ ++i+ev+++k++PwdLp e+e yfFs+r+ ky++g+r+nrat sgyWkatg RcHm_v2.0_Chr4g0429461 14 LPPGFRFHPTDEELVLQYLKRKVYSCPLPA-SIIPEVEVCKSDPWDLPGD---LEQERYFFSTREAKYPNGNRSNRATGSGYWKATG 96 79**************************.89***********54...46799************************* PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+++++ ++++vg+kktLvfy+g+ p+g++tdW+mheyrl RcHm_v2.0_Chr4g0429461 97 LDKQIVASrGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRL 138 *99857778*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MEKLSFVRNG ELRLPPGFRF HPTDEELVLQ YLKRKVYSCP LPASIIPEVE VCKSDPWDLP 60 GDLEQERYFF STREAKYPNG NRSNRATGSG YWKATGLDKQ IVASRGNQVV GMKKTLVFYR 120 GKPPHGSRTD WIMHEYRLVL AEDKNNSTTQ SPVPVNNWVL CRIFLKKRGS GKNEEELVQV 180 QACNVDRVAK NPRITRPVFY DFMTKDRTNL SLAPCSSSSG SSGVTDVVST ETEEHEESSS 240 CNSLPFFRRK Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-101	NAC family protein