PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0430411
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YC
Protein Properties Length: 118aa    MW: 13225 Da    PI: 9.8765
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0430411genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC23.89.2e-081693097
                   NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt.difdflvdivp 97
                            +k d d+++i +ea  l+s + +lf+  l+  s   a e+kr+ +k   i +a +r   + dfl+d+ p
  RcHm_v2.0_Chr4g0430411  1 MKLDRDINKINSEALHLVSCSAQLFLQFLAEASGEAAMEKKRKIVKLEHIRTAAKRHrATRDFLLDELP 69
                            9*************************************************99988762688*****987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    
MKLDRDINKI NSEALHLVSC SAQLFLQFLA EASGEAAMEK KRKIVKLEHI RTAAKRHRAT  60
RDFLLDELPV PSQPSDQKSA DRSRSRPVAD NPAPAGTRRI DDFFSKPATK SPIEVEES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.15e-39NF-YC family protein