PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0433071
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 428aa    MW: 47356.7 Da    PI: 7.0679
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0433071genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-1752101255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +gr++AeIrdp     +   r +lg+f+taeeAa a++ a++ ++g
  RcHm_v2.0_Chr4g0433071  52 RYRGVRRRP-WGRYAAEIRDP-----HskERRWLGTFDTAEEAACAYDYAARTMRG 101
                             59*******.**********6.....335999*********************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    
MEEAFRKLNG FTPTSQPDPT PVPSKKSTAT ASTTTNKRTL KDAPAGSAST MRYRGVRRRP  60
WGRYAAEIRD PHSKERRWLG TFDTAEEAAC AYDYAARTMR GVKARTNFVY PATTHDHLVP  120
AFTFHHPKQS QPSFKNQSNA RGYGQYVPNW PPFATYPNDF SGSGSDRSGT TTNTANSTAA  180
SLNMLFLRNF INSSSPSQNS SSVVSPNPPH SQAQCFSQNQ FQYTNGSSSS PNFSSGGCSS  240
FVNNNTTTSG TTTSHGRSSS SLMMNSTSSG CATHHELPVM ESSKNATTTA TSFVDSDFFP  300
VESSDTGLLE EVIHQFFPKP FSKESNPPKS VEYYTPTSFN STLEVKEEQQ PHVCPVDFDY  360
QQQQQHQQHQ QLGSFNGVQE VAEQTGPFYN DLPVNFQMNS ADHSMVVMDH SMFQQYYYPD  420
FVGSLQNA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.16e-15ERF family protein