PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0434161
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 350aa    MW: 38730.4 Da    PI: 8.6266
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0434161genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.24.2e-11267292126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             +ktelC+ ++++G C+y d C+FaHg
  RcHm_v2.0_Chr4g0434161 267 FKTELCNKWQESGDCPYKDHCQFAHG 292
                             79***********************9 PP
2zf-CCCH18.53.6e-06305329125
                             --S---SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                             ykte Cr  +++  C+yG rC+F H
  RcHm_v2.0_Chr4g0434161 305 YKTEVCRMVLAGDVCPYGHRCHFRH 329
                             9**********55**********88 PP
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    
MSRYDFSASG VKLKPRMQND VAYSTASARI GTSAMSSSQP QPYGGVYSSV YSSSIFGPKP  60
SSVAPYGVQS NSDTSQAYRN KLYQSLLVQN RQEMVNRHSL CLKRLHEAAE EADALRRENS  120
HLRNVNVELN KQLSLLIHAS IQKEIEASSS SVQRSPFGIV NGIRGLSIDG KSSAQEEEEL  180
SDQSPTSEEA ENVDVERISL PKSISVRSNG YVKLPPVTAA TNAAARIQTA ARSRIAKAIS  240
ASQKVYVQGG KKEEVPLELE VFNQGMFKTE LCNKWQESGD CPYKDHCQFA HGVEELRPVI  300
RHPRYKTEVC RMVLAGDVCP YGHRCHFRHA LTEEEKELAG GNNTPSRPIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.18e-76C3H family protein