PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0434891
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 299aa    MW: 33868.9 Da    PI: 6.0898
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0434891genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding568.9e-182168148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT +Ed ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl
  RcHm_v2.0_Chr4g0434891 21 KGPWTLDEDTLLIHYIANHGEGHWNALAKCAGLKRTGKSCRLRWLNYL 68
                            79********************************************97 PP
2Myb_DNA-binding53.46e-1774117146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+ T++E++l++++++++G++ W++Ia++++ gRt++++k++w++
  RcHm_v2.0_Chr4g0434891  74 RGNLTPQEQLLILELHAKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 117
                             7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MAGVANSVYT CPNEEENEMR KGPWTLDEDT LLIHYIANHG EGHWNALAKC AGLKRTGKSC  60
RLRWLNYLKP DIKRGNLTPQ EQLLILELHA KWGNRWSKIA QHLPGRTDNE IKNYWRTRVQ  120
KQARQLNIES DSKRFLDAVR CFWMPTLRQK MEQTSSLSLD PPSSSSSHSN YLTSQISIAP  180
SLSTSTQTCS VPSSPPSKVV SHVSDYSPIG TSSPSHNSLS SDSLISQLPQ ITEQPASSSY  240
AFEALNDNYY MDYDMEGFSL DPVSEMVSFD TSQFDCQMAE SYWIPSNYMT DTLWNMQGM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-83MYB family protein