PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0434901
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 239aa    MW: 26799.7 Da    PI: 6.6118
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0434901genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.7e-08126173455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++iN+++  L+ l+P +     k +  a +L  ++ Y++sLq
  RcHm_v2.0_Chr4g0434901 126 SHSLAERVRREKINERLRCLQNLVPGC----YKTMGMAVMLDVVISYVQSLQ 173
                             8*************************8....355888999999999999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MELIDSLCEL ESLGASHHHG IMALSTDSFT PHHHHDQQQP QVPAAMNFST DRSHDIQRFS  60
HSHDRNDDDH HHVLTAQSTA ADFGEQSQME KPLGGRKRKR SNSDKDMDKP KEVIHVRAKR  120
GQATDSHSLA ERVRREKINE RLRCLQNLVP GCYKTMGMAV MLDVVISYVQ SLQNQIEFLS  180
MKLSAASLYY DFNSPGHADP VDTTQGTNAY EVQENMVRSE QGYGGGGGLS FSQSTSWPL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.15e-53bHLH family protein