PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0435181
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 236aa    MW: 25250.6 Da    PI: 8.0002
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0435181genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.22.6e-2841081100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 
                             +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +l+l++a  e++r+ +++sl+yeA+ r+ +P  G+vg++++
  RcHm_v2.0_Chr4g0435181   4 SCNGCRVLRKGCSENCEIRPCIewiksPESQANATLFLAKFYGRAGLLNLINAGAEHQRPGIFKSLLYEACGRIVNPTFGSVGLLSS 90 
                             6************************************************************************************** PP

                  DUF260  83 lqqqleqlkaelallkee 100
                             +++  +q++++++l++++
  RcHm_v2.0_Chr4g0435181  91 GNWAQCQAAVDAVLAGSP 108
                             **********99988765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MRTSCNGCRV LRKGCSENCE IRPCIEWIKS PESQANATLF LAKFYGRAGL LNLINAGAEH  60
QRPGIFKSLL YEACGRIVNP TFGSVGLLSS GNWAQCQAAV DAVLAGSPIV ETNAPVPHLN  120
PNPVQGPPAN SCDIRHVSKD TSLGKTRNRF KRSMTRPKIQ LGSITEAAAG WGRVNPHELG  180
QSSSGGGGER SMHSVETVEA PWMMNRGEPD PVGNDDEEVG LELTLGLGFG KLNGKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.12e-68LBD family protein