PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0435191

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CO-like

Protein Properties

Length: 446aa MW: 49454.9 Da PI: 6.0105

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0435191	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.8	1.2e-09	24	67	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC+ C ++ H+ H++v RcHm_v2.0_Chr4g0435191 24 ARACDSCIKKRARWYCAADDAFLCQACDSSVHSAnqlarrHERV 67 578*****************************657788888876 PP
2	CCT	68	2.6e-23	384	427	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a RcHm_v2.0_Chr4g0435191 384 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 427 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MISNKKAAAS ASAATANVVG GKTARACDSC IKKRARWYCA ADDAFLCQAC DSSVHSANQL 60 ARRHERVRLK TASSILKSST NSGSCDKSEV PSWHRGFTKK ARTPRHGKSG THRNRFPLVP 120 EVGADDLSYE ENEEEQLLYR VPVYDPFVAE LCTSPNSNTV SNESKAVSKP NYSRVGSGNS 180 SSSHGFDLPS DMDLANFAAD VDSLLGRGLD DDKCFGMEGL GLLDCHEKES TTTEEGSTGR 240 VKLEDEEDAY MECQAETEID LMREPFVLNF EDYDDSPASC AEDEEDDDKL GVTMSHGEMK 300 SSSEEHKSCK KRKIFLRLDY DAVITKWDSE SKGSPWTFGE RPDLDSDCLP DSMGTSNGAE 360 LIHYPYGDLN GVIGLHPAMT DGGREARVSR YREKRRTRLF SKKIRYEVRK LNAEKRPRMK 420 GRFVKRASFA ASGSTFPTLN KEVMDS

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MISNKKAAAS ASAATANVVG GKTARACDSC IKKRARWYCA ADDAFLCQAC DSSVHSANQL  60
ARRHERVRLK TASSILKSST NSGSCDKSEV PSWHRGFTKK ARTPRHGKSG THRNRFPLVP  120
EVGADDLSYE ENEEEQLLYR VPVYDPFVAE LCTSPNSNTV SNESKAVSKP NYSRVGSGNS  180
SSSHGFDLPS DMDLANFAAD VDSLLGRGLD DDKCFGMEGL GLLDCHEKES TTTEEGSTGR  240
VKLEDEEDAY MECQAETEID LMREPFVLNF EDYDDSPASC AEDEEDDDKL GVTMSHGEMK  300
SSSEEHKSCK KRKIFLRLDY DAVITKWDSE SKGSPWTFGE RPDLDSDCLP DSMGTSNGAE  360
LIHYPYGDLN GVIGLHPAMT DGGREARVSR YREKRRTRLF SKKIRYEVRK LNAEKRPRMK  420
GRFVKRASFA ASGSTFPTLN KEVMDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	395	411	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-94	CO-like family protein