PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0435261
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 347aa    MW: 38504.7 Da    PI: 4.4804
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0435261genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.3e-18113163155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s ++GVr++k +g+W+AeIrd +     + +r++lg++ tae+A ka+++ r+++e+
  RcHm_v2.0_Chr4g0435261 113 SPFRGVRQRK-WGKWAAEIRDpF-----SkTRVWLGTYNTAEDASKAYEERRLYFEK 163
                             679******9.**********66.....34*******************99988875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    
MPEPRNPRLN QRNSFKKSKR EQLFPAEEPK MVRKVRIICS DPDATDDSSS EDEGIDRKLH  60
KRMVKEITLP FNFTRPSKLV VEPEGSSNNG VKTPTPKPKL GVLAKTSKKS SNSPFRGVRQ  120
RKWGKWAAEI RDPFSKTRVW LGTYNTAEDA SKAYEERRLY FEKMLSLATA SEVSSEKSNT  180
TTTSCSAVVS RSVNNTQQPA VSSEEESDCV YSQRSPASVL DVETCASNNI RSGGDLENGG  240
DMETEDVGTN ALGELPIPND LGFMDEQPFG PELNFDGIEP VSFQAEIDSL LLDEIGQFFN  300
DFGSIDDVHI GGFEGNEPSN LPDCDFGDLG KEDFACWMTE TSNIQCQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.12e-39ERF family protein