PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0435841

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 457aa MW: 51463.3 Da PI: 4.8989

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0435841	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	98.8	8.1e-31	57	196	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleev.ikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 lp+G++F+Ptd+e++++ L+k +g+ +++ ++ i+++d ++ ++P++Lp +k++ + +fF+ + k+y+tg+rk+r+++ RcHm_v2.0_Chr4g0435841 57 LPKGVKFDPTDQEIIWHLLAKTGAGDLrpHPFIDAfITDFDddegVLCSHPKKLP-GIKQDGSVSHFFHLAIKAYNTGTRKRRKIHd 142 799**********998888876665664443434666644556999***.777888899**************8554 PP NAM 80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tg++k+v+ +g + g+kk++v+y ++ k+ekt+Wvmh+y+l RcHm_v2.0_Chr4g0435841 143 deygDIRWHKTGRTKPVIL-DGVQRGCKKIMVLYtsMAKGGKAEKTNWVMHQYHL 196 4444567********.99********4434666778*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MAGPSWLVDK KRIATKIRNA STSDPARIKW QSNPTRACPN CQYMIDNSDV AQEWPGLPKG 60 VKFDPTDQEI IWHLLAKTGA GDLRPHPFID AFITDFDDDE GVLCSHPKKL PGIKQDGSVS 120 HFFHLAIKAY NTGTRKRRKI HDDEYGDIRW HKTGRTKPVI LDGVQRGCKK IMVLYTSMAK 180 GGKAEKTNWV MHQYHLGTDE DEKDGEYVIS KIYYQQQQVK QADKTDQNSP ETSDPVIQAD 240 PVTPKSVIPE TLDPAFNLGE DIPAACTEPK SITPEPPRPE RRHSNLGLGE DTHVASTDPF 300 LQMQLKHRDM DFVEDEVHHE YENSGCHDQH SIEIPNDEAI NNNVNHTQED PKWWDSESQN 360 LLDSQQLVEG LSLCDDLLQS QSPTRGEHGN GEPAQVKPCL ADYAKLGADD LKKDLEECQN 420 IVLDPANMEL GTPPDFRLSQ LEFESQESFL SWGGKLA

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MAGPSWLVDK KRIATKIRNA STSDPARIKW QSNPTRACPN CQYMIDNSDV AQEWPGLPKG  60
VKFDPTDQEI IWHLLAKTGA GDLRPHPFID AFITDFDDDE GVLCSHPKKL PGIKQDGSVS  120
HFFHLAIKAY NTGTRKRRKI HDDEYGDIRW HKTGRTKPVI LDGVQRGCKK IMVLYTSMAK  180
GGKAEKTNWV MHQYHLGTDE DEKDGEYVIS KIYYQQQQVK QADKTDQNSP ETSDPVIQAD  240
PVTPKSVIPE TLDPAFNLGE DIPAACTEPK SITPEPPRPE RRHSNLGLGE DTHVASTDPF  300
LQMQLKHRDM DFVEDEVHHE YENSGCHDQH SIEIPNDEAI NNNVNHTQED PKWWDSESQN  360
LLDSQQLVEG LSLCDDLLQS QSPTRGEHGN GEPAQVKPCL ADYAKLGADD LKKDLEECQN  420
IVLDPANMEL GTPPDFRLSQ LEFESQESFL SWGGKLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	1e-155	NAC family protein