PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0437841
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28881.8 Da    PI: 8.7092
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0437841genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.74.9e-31959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krienk+nrqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eys+
  RcHm_v2.0_Chr4g0437841  9 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDAQVALIVFSNKGKLFEYST 59
                            79***********************************************96 PP
2K-box100.22.8e-33781744100
                   K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                             ++ ++ + + + +++ e+a+Lk ++e Lqr++Rh+lGedL+sLs+ke+q+LeqqL++slk+iRs+Kn+l++e+++elq+kek++qe+
  RcHm_v2.0_Chr4g0437841  78 RQLVEPDLESQGNWTFEHARLKVKVELLQRNLRHYLGEDLDSLSIKEIQSLEQQLDNSLKQIRSRKNQLMHESMSELQRKEKAMQEQ 164
                             5666656667799************************************************************************** PP

                   K-box  91 nkaLrkklee 100
                             n+ L+kk++e
  RcHm_v2.0_Chr4g0437841 165 NNLLSKKIKE 174
                             *******987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD AQVALIVFSN KGKLFEYSTD  60
SCMENILERY ERYSYAERQL VEPDLESQGN WTFEHARLKV KVELLQRNLR HYLGEDLDSL  120
SIKEIQSLEQ QLDNSLKQIR SRKNQLMHES MSELQRKEKA MQEQNNLLSK KIKEKEKNVA  180
EAQEVHNWEQ QQQQQNHGLN LVAQAPLPCL NMGGTQQNDQ FLQVRRNQLD LTLEPSLYSC  240
HLGCFAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-113MIKC_MADS family protein