PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0437851
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28378.2 Da    PI: 9.3063
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0437851genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.17.5e-31959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krienk+nrqvtf+kRrng+lKKA+ELS LCdaeva+iifss+gklye++s
  RcHm_v2.0_Chr4g0437851  9 KRIENKINRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSSRGKLYEFCS 59
                            79***********************************************96 PP
2K-box867.6e-29821739100
                   K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                             + +++++s ++e+++Lk ++e Lqr+qR++lGedLe+L+ keL+qLe++L+ slk++Rs++++++leq+++lq+kek+l e+n +Lr
  RcHm_v2.0_Chr4g0437851  82 QPAQNTQSRYEEYENLKLKVEVLQRTQRRFLGEDLENLDTKELEQLENELDLSLKRVRSRQSQHILEQLSDLQRKEKMLLEANDELR 168
                             567999********************************************************************************* PP

                   K-box  96 kklee 100
                             +klee
  RcHm_v2.0_Chr4g0437851 169 RKLEE 173
                             **987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSLLCD AEVALIIFSS RGKLYEFCSG  60
PSMEKTLEKY RRYTYAALEA GQPAQNTQSR YEEYENLKLK VEVLQRTQRR FLGEDLENLD  120
TKELEQLENE LDLSLKRVRS RQSQHILEQL SDLQRKEKML LEANDELRRK LEESNEGLQR  180
SWKAKQLSIP NGHPSTAQSD QGLFERLQCN NKALQIGHSR EVTTEVNVAT STQTRSGFVP  240
EWML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.23e-88MIKC_MADS family protein