PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0438571
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 228aa    MW: 25826.8 Da    PI: 8.7004
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0438571genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.71.2e-32431771128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyat.gkrknratksgyW 83 
                             lp G+rF+P d+elv +yL +k+ g++l++++vike+d+y+ +P +Lp    ++ ++ +e y+F++ ++ y++ gk ++r+tk gyW
  RcHm_v2.0_Chr4g0438571  43 LPTGYRFSPDDDELVLFYLVNKILGRTLPITDVIKEIDLYENDPDQLPlDdyRHGTKCNEAYYFTNVEQIYSSeGKVTKRTTKGGYW 129
                             699*********************************************6434444455699********99964889999******* PP

                     NAM  84 katgkdkevlsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                             k t + k+v+   ++ +vg k+++ f kg   apkg+ ++ vmheyr+
  RcHm_v2.0_Chr4g0438571 130 KVTSEGKQVIYGdDKVVVGFKTSMLFNKGhvPAPKGSISSFVMHEYRV 177
                             ****9888887647778**********88556999***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MLSWVFIIVF MAFSPSASKK KGDFDLLKCS KVDVGKKEKE LKLPTGYRFS PDDDELVLFY  60
LVNKILGRTL PITDVIKEID LYENDPDQLP LDDYRHGTKC NEAYYFTNVE QIYSSEGKVT  120
KRTTKGGYWK VTSEGKQVIY GDDKVVVGFK TSMLFNKGHV PAPKGSISSF VMHEYRVNPS  180
IVPVDVLNDS IRAKIERFVV CKIVSKEARP AYKLPPELLS HGEDAKSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.14e-28NAC family protein