PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0438641

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 549aa MW: 62237.2 Da PI: 7.8815

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0438641	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0017	100	118	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +C+ Cgk F++ L H+ RcHm_v2.0_Chr4g0438641 100 VCKECGKGFPSLKALCGHM 118 6*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence
MEEDQNQHKK FVCKFCNRRF QCGKSLGGHI RTHLNKKPTR EKEQEMEEDE FARVTRTAKL 60 LSLDSGPEGQ SGYRLRENPK KTWRFADHKV PSFQFQQEKV CKECGKGFPS LKALCGHMAC 120 HSDKERKLEE FSETSEKQKL VMDSQSDTET SSAPTKQRRV LKRMRENNFE VHHGGCSSGS 180 GVEQEQQEVA ISLMMLSRDS GYKGGLNSFG ESSDNNSVIL EGKSSSIDMR ISTKRGLSYA 240 AKVNDVMDLK RAREKKLNYE EVTVSDNSDS GYYIHEPKKV ESDVSVDGFV RNGEFKKYRA 300 EFGSGFGRYE SYDVKSRRAF SSKSEMVKKL PREEAYEQGD RGSLKYALRK STKNGFHRPF 360 TSGSSSVEAY KNVRKSSKYE CLTCNKTFHS HRALGGHRAS HTKSNGYSES MYESGENSVD 420 SDESPIPTPE SQLVEHNKPY KGKTPINQDL GAKRNSGSKR SKGHECPFCF KVFKSGQALG 480 GHKRSHFVGG CEVKTVVLGQ EHQHPEEEEE EEHELEVPEN EAEIPTLFDL NLPAPMEEEA 540 NGNFEYMSW

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence

MEEDQNQHKK FVCKFCNRRF QCGKSLGGHI RTHLNKKPTR EKEQEMEEDE FARVTRTAKL  60
LSLDSGPEGQ SGYRLRENPK KTWRFADHKV PSFQFQQEKV CKECGKGFPS LKALCGHMAC  120
HSDKERKLEE FSETSEKQKL VMDSQSDTET SSAPTKQRRV LKRMRENNFE VHHGGCSSGS  180
GVEQEQQEVA ISLMMLSRDS GYKGGLNSFG ESSDNNSVIL EGKSSSIDMR ISTKRGLSYA  240
AKVNDVMDLK RAREKKLNYE EVTVSDNSDS GYYIHEPKKV ESDVSVDGFV RNGEFKKYRA  300
EFGSGFGRYE SYDVKSRRAF SSKSEMVKKL PREEAYEQGD RGSLKYALRK STKNGFHRPF  360
TSGSSSVEAY KNVRKSSKYE CLTCNKTFHS HRALGGHRAS HTKSNGYSES MYESGENSVD  420
SDESPIPTPE SQLVEHNKPY KGKTPINQDL GAKRNSGSKR SKGHECPFCF KVFKSGQALG  480
GHKRSHFVGG CEVKTVVLGQ EHQHPEEEEE EEHELEVPEN EAEIPTLFDL NLPAPMEEEA  540
NGNFEYMSW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	6e-95	C2H2 family protein