PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0439191
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 280aa    MW: 32212.8 Da    PI: 8.7328
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0439191genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.6e-1825107998
                             HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                      B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                             +vl +g l +p++f+e+++gk ++  + +l+++sg +W v +  ++ sg+++l+kGWkeFv an+Lk g+ vvF ++g+ +f  +v 
  RcHm_v2.0_Chr4g0439191  25 SVLLKGKLKIPRDFCENFEGKMPQ--QCRLQTLSG-TWHVDV--KNISGEFFLKKGWKEFVVANRLKLGECVVFDYIGHAKF--YVE 104
                             6777899********999999655..699999887.8*****..*********************************98777..888 PP

                             EE- CS
                      B3  96 vfr 98 
                             ++ 
  RcHm_v2.0_Chr4g0439191 105 IYG 107
                             875 PP
2B3382.8e-12189275394
                             EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS
                      B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87 
                              ++ + +v+k   l  p++f++++ ++  +  +++l+      W+v+ i+  ++++  +++GW +F+++n+L+egDf+ F+l+ ++ 
  RcHm_v2.0_Chr4g0439191 189 VKMCQTHVTKGP-LLTPRSFMRNIHKP--K--KVKLQV-GDMAWDVNWIH-PYQQSSRFSGGWLHFASQNRLQEGDFCDFELIsKTi 268
                             566677777777.555*****888644..4..566554.55899999965.55555569**********************993445 PP

                             SEE..EE CS
                      B3  88 sefelvv 94 
                             + + ++v
  RcHm_v2.0_Chr4g0439191 269 EVAVMKV 275
                             5554444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MGSCSRRRED EDSEFPGFYK CVDYSVLLKG KLKIPRDFCE NFEGKMPQQC RLQTLSGTWH  60
VDVKNISGEF FLKKGWKEFV VANRLKLGEC VVFDYIGHAK FYVEIYGHNH CSKSSKAMRS  120
ERLLDDDSDD HNVVFVYSDS DSEPRNSEIS LESETECPRK SGYGKILSRR GRAGNSATIR  180
CFGNPCFSVK MCQTHVTKGP LLTPRSFMRN IHKPKKVKLQ VGDMAWDVNW IHPYQQSSRF  240
SGGWLHFASQ NRLQEGDFCD FELISKTIEV AVMKVSIRKM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.14e-12B3 family protein