PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0439901

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 457aa MW: 50765.5 Da PI: 7.197

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0439901	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.7	1.9e-52	23	152	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 l pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg RcHm_v2.0_Chr4g0439901 23 LLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKFDPWDLPKLAASGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATG 108 579*************************.89***********8888899**************************** PP NAM 88 kdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +d++++s+ +++ +glkk+Lvfy+gra kg+ktdW+mhe+rl RcHm_v2.0_Chr4g0439901 109 TDRPIYSSegnSNKCIGLKKSLVFYRGRAAKGVKTDWMMHEFRL 152 ***96655556*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MDQERSSSCD MSAADQDKID EVLLPGFRFH PTDEELVGFY LKRKIQQRPL SIELIKQLDI 60 YKFDPWDLPK LAASGEKEWY FYCPRDRKYR NSTRPNRVTG AGFWKATGTD RPIYSSEGNS 120 NKCIGLKKSL VFYRGRAAKG VKTDWMMHEF RLPSLTDSSV LPPKRSFMDK IAIPANDSWA 180 ICRIFKKTNS SAHQRAISHH SWVSQTLSEP NTFQDHVLGS SRLGAQTTST TQYGGNNIDT 240 QQISTSTSTS TLSPGDYYAN NSYKTLHPSI ACNLKPYHQY FPISNAGEYC NPNFTFSPLE 300 SPAAKCSVDV SSLLLNMSSS VLGDFGTKLA SAESSTTFDF SSTTGSQEQQ CNNGFSSLTT 360 LPHHDVMQGN QLGVVGSHDH SIDALMKNIT NHANSNAIET DDHGHWESSL RSSIGFPFMN 420 SLPVIPLNIG GGDAWKSNLT WDSSPCPSEM STTRCYS

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MDQERSSSCD MSAADQDKID EVLLPGFRFH PTDEELVGFY LKRKIQQRPL SIELIKQLDI  60
YKFDPWDLPK LAASGEKEWY FYCPRDRKYR NSTRPNRVTG AGFWKATGTD RPIYSSEGNS  120
NKCIGLKKSL VFYRGRAAKG VKTDWMMHEF RLPSLTDSSV LPPKRSFMDK IAIPANDSWA  180
ICRIFKKTNS SAHQRAISHH SWVSQTLSEP NTFQDHVLGS SRLGAQTTST TQYGGNNIDT  240
QQISTSTSTS TLSPGDYYAN NSYKTLHPSI ACNLKPYHQY FPISNAGEYC NPNFTFSPLE  300
SPAAKCSVDV SSLLLNMSSS VLGDFGTKLA SAESSTTFDF SSTTGSQEQQ CNNGFSSLTT  360
LPHHDVMQGN QLGVVGSHDH SIDALMKNIT NHANSNAIET DDHGHWESSL RSSIGFPFMN  420
SLPVIPLNIG GGDAWKSNLT WDSSPCPSEM STTRCYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	9e-98	NAC family protein