PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0441081
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 263aa    MW: 29863.7 Da    PI: 8.2421
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0441081genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-171360148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W+++Ed++l+d+++++G g+W+t ++  g+ R++k+c++rw +yl
  RcHm_v2.0_Chr4g0441081 13 KGAWSKQEDQKLIDYIRKHGEGCWRTLPQAAGLLRCGKSCRLRWINYL 60
                            79******************************99************97 PP
2Myb_DNA-binding52.11.5e-1666111148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  RcHm_v2.0_Chr4g0441081  66 RGKFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111
                             899*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MRKPCCDKQD TNKGAWSKQE DQKLIDYIRK HGEGCWRTLP QAAGLLRCGK SCRLRWINYL  60
RPDLKRGKFA EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LRRKLMNMGI  120
DPNNHRPTNT LLPRPHNHHQ SPPQTLKSPA GSGINNFNHE PVVIESKSSR GDDQNCEQVS  180
DGRSCLEDDS SCGGHHLPDL NLDLTVHLSA PNFSSPNDDH QYLIKELNEP IHRPHLNISD  240
PPEMLIGTKS AIFASSTTLP LFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-79MYB family protein