PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0441531

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 257aa MW: 29866.3 Da PI: 7.6973

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0441531	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.5e-18	33	94	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r++R+++ +eq+ Leel+++ ++p+a+++++ +++l +++ ++V++WFqN+Ra+e++ RcHm_v2.0_Chr4g0441531 33 RSSRWNPIPEQIMHLEELYRSgIKTPTAQQIRQVTARLrnygRVEGKNVFYWFQNHRARERQ 94 689***************99************************************97 PP
2	Wus_type_Homeobox	107.9	6.2e-35	34	96	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+P peQi+ Leely+sG++tP++++i+++ta+L++yG++e+kNVfyWFQN++aRerqk+ RcHm_v2.0_Chr4g0441531 34 SSRWNPIPEQIMHLEELYRSGIKTPTAQQIRQVTARLRNYGRVEGKNVFYWFQNHRARERQKR 96 79***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MYAVVPVTSD EQGRNSSDCF YSDKQPAAAA PPRSSRWNPI PEQIMHLEEL YRSGIKTPTA 60 QQIRQVTARL RNYGRVEGKN VFYWFQNHRA RERQKRRREL MSMYQSDSQQ QQQTLTNTTI 120 SGLPDKESAG VDFVGRLEVE QQNKRTLPKF TLPSDQESSS VPRERMMSMV KRNSSRQLVE 180 QSGSPGPTSD TNWSDTLIYK KPLDFHHYYD YDYGMILTTP NIYKDEQEEE SRETQTLELF 240 PLESDNLKGA KDTKLHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	7e-25	WOX family protein